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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs11125529 1 rs62139251 chr2:54478605 C2orf73 chr2:54558071-54588714:+ 0.34 4.68 3.76E-6 Telomere length
THCA cis rs11125529 1 rs62139254 chr2:54480336 C2orf73 chr2:54558071-54588714:+ 0.32 4.55 6.86E-6 Telomere length
THCA cis rs9309473 1 rs62151652 chr2:73700131 ALMS1P chr2:73872046-73912692:+ 0.75 11.65 8.42E-28 Metabolite levels
THCA cis rs9309473 1 rs62151652 chr2:73700131 NAT8 chr2:73867850-73869537:- 0.41 6.23 1.04E-9 Metabolite levels
THCA cis rs2200578 1 rs62153845 chr2:99887162 LIPT1 chr2:99771418-99779611:+ 0.2 3.91 0.000105 IgG glycosylation
THCA cis rs867529 1 rs62157778 chr2:88934090 RPIA chr2:88991176-89050451:+ 0.36 6.68 6.65E-11 Height
THCA cis rs994533 1 rs62175475 chr2:218290358 DIRC3 chr2:218148748-218621316:- 0.2 4.65 4.27E-6 Height
THCA cis rs4664308 1 rs62175515 chr2:160909524 LY75 chr2:160625141-160761262:- 0.21 4.97 9.51E-7 Idiopathic membranous nephropathy
THCA cis rs4664308 1 rs62175517 chr2:160911575 LY75 chr2:160625141-160761262:- 0.21 4.97 9.51E-7 Idiopathic membranous nephropathy
THCA cis rs721048 1 rs62180307 chr2:63341015 C2orf86 chr2:63348537-63815851:- 0.25 5.73 1.8E-8 Prostate cancer
THCA cis rs62184315 1 rs62184315 chr2:190771945 ASNSD1 chr2:190526125-190535556:+ -0.45 -6.75 4.34E-11 Alcohol dependence (age at onset)
THCA cis rs62184315 1 rs62184315 chr2:190771945 ORMDL1 chr2:190634994-190649097:- 0.25 5.43 8.77E-8 Alcohol dependence (age at onset)
THCA cis rs3771570 1 rs62186400 chr2:242226700 ANO7 chr2:242127924-242164791:+ 0.35 4.19 3.3E-5 Prostate cancer
THCA cis rs3771570 1 rs62186400 chr2:242226700 SEPT2 chr2:242254723-242293439:+ -0.29 -4.32 1.86E-5 Prostate cancer
THCA cis rs3771570 1 rs62186411 chr2:242236667 ANO7 chr2:242127924-242164791:+ 0.36 4.22 2.97E-5 Prostate cancer